Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DWZ36_01325 | Not Available | Negative | 333292 - 333807 | 20705.7 |
| helix-turn-helix domain-containing protein | DWZ36_01330 | Not Available | Negative | 334008 - 336821 | 106654.0 |
| six-hairpin glycosidase | DWZ36_01335 | Not Available | Negative | 336980 - 339718 | 102960.0 |
| hypothetical protein | DWZ36_01340 | Not Available | Negative | 339808 - 341409 | 60317.0 |
| beta-glucosidase | DWZ36_01345 | Not Available | Positive | 341545 - 343911 | 87829.0 |
| glycoside hydrolase | DWZ36_01350 | Not Available | Negative | 344065 - 347490 | 130581.0 |
| alpha-glucosidase | DWZ36_01355 | Not Available | Negative | 347487 - 349421 | 73702.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_01360 | Not Available | Negative | 349573 - 351399 | 68526.6 |
| tonb-dependent receptor | DWZ36_01365 | Not Available | Negative | 351410 - 354487 | 113749.0 |
| rna polymerase sigma-70 factor | DWZ36_01370 | Not Available | Negative | 354613 - 355158 | 21359.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

