Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4105 domain-containing protein | DWZ36_13925 | Not Available | Negative | 3268736 - 3269911 | 45049.3 |
| type iii pantothenate kinase | DWZ36_13930 | Not Available | Positive | 3270038 - 3270766 | 26911.9 |
| hypothetical protein | DWZ36_13935 | Not Available | Positive | 3270753 - 3272069 | 49216.0 |
| tetratricopeptide repeat protein | DWZ36_13940 | Not Available | Positive | 3272116 - 3273471 | 50268.8 |
| lps export abc transporter periplasmic protein lptc | DWZ36_13945 | Not Available | Positive | 3273474 - 3274118 | 24876.2 |
| hlyc/corc family transporter | DWZ36_13950 | Not Available | Positive | 3274132 - 3275391 | 47647.0 |
| peptidylprolyl isomerase | DWZ36_13955 | Not Available | Positive | 3275497 - 3277629 | 78893.4 |
| energy transducer tonb | DWZ36_13960 | Not Available | Negative | 3278259 - 3279344 | 41925.6 |
| ketol-acid reductoisomerase | DWZ36_13965 | Not Available | Negative | 3279472 - 3280515 | 38168.5 |
| acyl-[acyl-carrier-protein] thioesterase | DWZ36_13970 | Not Available | Negative | 3280550 - 3281293 | 28470.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

