Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| relaxase | DWZ36_13825 | Not Available | Negative | 3243453 - 3244664 | 46155.7 |
| metalloproteinase | DWZ36_13830 | Not Available | Negative | 3244661 - 3245089 | 16019.3 |
| mobilization protein | DWZ36_13835 | Not Available | Negative | 3245395 - 3246465 | 40353.3 |
| dna-binding protein | DWZ36_13840 | Not Available | Negative | 3246468 - 3246842 | 14636.4 |
| hypothetical protein | DWZ36_13845 | Not Available | Negative | 3246942 - 3247787 | 32148.8 |
| site-specific integrase | DWZ36_13850 | Not Available | Negative | 3247957 - 3249072 | 43801.1 |
| dna-binding protein | DWZ36_13855 | Not Available | Negative | 3249190 - 3250068 | 35237.6 |
| atp-binding protein | DWZ36_13860 | Not Available | Positive | 3250885 - 3252195 | 49370.4 |
| hypothetical protein | DWZ36_13865 | Not Available | Positive | 3252315 - 3252515 | 7780.62 |
| rlob domain-containing protein | DWZ36_13870 | Not Available | Positive | 3252571 - 3252945 | 14336.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

