Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | DWZ36_13770 | Not Available | Positive | 3232995 - 3233696 | 26721.0 |
| type i restriction-modification system subunit m | DWZ36_13775 | Not Available | Positive | 3233704 - 3235257 | 58859.1 |
| cell filamentation protein fic | DWZ36_13780 | Not Available | Positive | 3235292 - 3236671 | 53339.3 |
| restriction endonuclease subunit s | DWZ36_13790 | Not Available | Negative | 3237868 - 3238524 | 24614.5 |
| hypothetical protein | DWZ36_13795 | Not Available | Negative | 3238537 - 3239082 | 21266.5 |
| restriction endonuclease subunit s | DWZ36_13800 | Not Available | Positive | 3239358 - 3239912 | 21568.9 |
| restriction endonuclease subunit s | DWZ36_13805 | Not Available | Negative | 3239905 - 3241035 | 42492.4 |
| site-specific integrase | DWZ36_13810 | Not Available | Positive | 3241075 - 3242001 | 35828.9 |
| hypothetical protein | DWZ36_13815 | Not Available | Negative | 3242069 - 3242830 | 28963.0 |
| hypothetical protein | DWZ36_13820 | Not Available | Negative | 3242903 - 3243436 | 20618.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

