Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_13705 | Not Available | Positive | 3219302 - 3219577 | 11359.8 |
| hypothetical protein | DWZ36_13710 | Not Available | Negative | 3219765 - 3220001 | 9178.13 |
| metallophosphatase | DWZ36_13720 | Not Available | Positive | 3220650 - 3221417 | 30233.9 |
| xre family transcriptional regulator | DWZ36_13730 | Not Available | Positive | 3222943 - 3223263 | 11877.8 |
| type ii toxin-antitoxin system hipa family toxin | DWZ36_13735 | Not Available | Positive | 3223267 - 3224529 | 47562.5 |
| hypothetical protein | DWZ36_13740 | Not Available | Positive | 3224605 - 3228201 | 136671.0 |
| hypothetical protein | DWZ36_13745 | Not Available | Positive | 3228198 - 3228422 | 8789.55 |
| duf2971 domain-containing protein | DWZ36_13755 | Not Available | Positive | 3228887 - 3229732 | 33434.5 |
| xre family transcriptional regulator | DWZ36_13760 | Not Available | Positive | 3229846 - 3230127 | 10429.7 |
| type i restriction endonuclease subunit r | DWZ36_13765 | Not Available | Positive | 3230153 - 3232981 | 108922.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

