Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase f | DWZ36_13650 | Not Available | Positive | 3211546 - 3212928 | 52181.3 |
| hypothetical protein | DWZ36_13655 | Not Available | Negative | 3213215 - 3213400 | 6642.76 |
| hypothetical protein | DWZ36_13660 | Not Available | Negative | 3213931 - 3215274 | 51653.8 |
| hypothetical protein | DWZ36_13665 | Not Available | Positive | 3215984 - 3216382 | 15536.1 |
| duf3089 domain-containing protein | DWZ36_13670 | Not Available | Positive | 3216386 - 3216808 | 16200.2 |
| duf3089 domain-containing protein | DWZ36_13675 | Not Available | Positive | 3216895 - 3217228 | 12165.7 |
| transposase | DWZ36_13680 | Not Available | Negative | 3217347 - 3217697 | 13598.6 |
| hypothetical protein | DWZ36_13690 | Not Available | Negative | 3218039 - 3218263 | 8663.71 |
| hypothetical protein | DWZ36_13695 | Not Available | Positive | 3218612 - 3218827 | 8094.85 |
| hypothetical protein | DWZ36_13700 | Not Available | Positive | 3219160 - 3219354 | 7429.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

