Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh peroxidase | DWZ36_13600 | Not Available | Negative | 3202237 - 3202788 | 20566.4 |
| transcriptional repressor | DWZ36_13605 | Not Available | Negative | 3202866 - 3203276 | 15560.8 |
| nad(+) synthase | DWZ36_13610 | Not Available | Positive | 3203441 - 3205366 | 71124.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DWZ36_13615 | Not Available | Negative | 3205456 - 3206574 | 42235.8 |
| histidinol-phosphate transaminase | DWZ36_13620 | Not Available | Negative | 3206578 - 3207618 | 39610.4 |
| histidinol dehydrogenase | DWZ36_13625 | Not Available | Negative | 3207621 - 3208901 | 46475.1 |
| atp phosphoribosyltransferase | DWZ36_13630 | Not Available | Negative | 3208951 - 3209802 | 31336.4 |
| paai family thioesterase | DWZ36_13635 | Not Available | Negative | 3210031 - 3210522 | 18785.7 |
| dabb family protein | DWZ36_13640 | Not Available | Negative | 3210533 - 3210832 | 11090.4 |
| uridine kinase | DWZ36_13645 | Not Available | Positive | 3210938 - 3211549 | 23287.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

