Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth domain-containing protein | DWZ36_13495 | Not Available | Positive | 3176503 - 3178044 | 58205.3 |
| haloacid dehalogenase | DWZ36_13505 | Not Available | Negative | 3178938 - 3180044 | 42672.0 |
| molecular chaperone dnak | DWZ36_13510 | Not Available | Negative | 3180144 - 3182060 | 68358.2 |
| meta domain-containing protein | DWZ36_13515 | Not Available | Negative | 3182389 - 3183180 | 28653.9 |
| hypothetical protein | DWZ36_13520 | Not Available | Positive | 3183305 - 3184558 | 47788.1 |
| saccharopine dehydrogenase family protein | DWZ36_13525 | Not Available | Positive | 3184642 - 3185835 | 44966.5 |
| thioredoxin-dependent thiol peroxidase | DWZ36_13530 | Not Available | Positive | 3185903 - 3186349 | 16910.4 |
| recombinase reca | DWZ36_13535 | Not Available | Positive | 3186362 - 3187405 | 37350.7 |
| duf4923 family protein | DWZ36_13540 | Not Available | Negative | 3187479 - 3188075 | 21300.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_13545 | Not Available | Negative | 3188281 - 3189996 | 63842.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

