Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ahpc/tsa family protein | DWZ36_13440 | Not Available | Negative | 3161042 - 3162220 | 44862.0 |
| tlpa family protein disulfide reductase | DWZ36_13445 | Not Available | Negative | 3162228 - 3163604 | 51192.3 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_13450 | Not Available | Negative | 3163621 - 3164994 | 52370.6 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_13455 | Not Available | Negative | 3165013 - 3168507 | 130602.0 |
| fecr family protein | DWZ36_13460 | Not Available | Negative | 3168565 - 3169644 | 41259.7 |
| rna polymerase subunit sigma-70 | DWZ36_13465 | Not Available | Negative | 3169717 - 3170283 | 22495.3 |
| polysaccharide export protein | DWZ36_13475 | Not Available | Negative | 3172863 - 3173663 | 29352.7 |
| hypothetical protein | DWZ36_13480 | Not Available | Negative | 3173689 - 3174123 | 16620.7 |
| upxy family transcription antiterminator | DWZ36_13485 | Not Available | Negative | 3174141 - 3174791 | 24605.0 |
| site-specific integrase | DWZ36_13490 | Not Available | Negative | 3175088 - 3176023 | 36310.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

