Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminodeoxychorismate synthase component i | DWZ36_13390 | Not Available | Negative | 3140348 - 3141331 | 37387.9 |
| hypothetical protein | DWZ36_13395 | Not Available | Negative | 3141672 - 3143705 | 77555.3 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWZ36_13400 | Not Available | Negative | 3143725 - 3144726 | 37462.1 |
| 1,4-beta-xylanase | DWZ36_13405 | Not Available | Negative | 3144723 - 3145691 | 37042.1 |
| glycoside hydrolase | DWZ36_13410 | Not Available | Negative | 3145700 - 3148333 | 101166.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_13415 | Not Available | Negative | 3148413 - 3150002 | 61771.0 |
| tonb-dependent receptor | DWZ36_13420 | Not Available | Negative | 3150024 - 3153023 | 112088.0 |
| hybrid sensor histidine kinase/response regulator | DWZ36_13425 | Not Available | Negative | 3153339 - 3157289 | 152165.0 |
| galactose mutarotase | DWZ36_13430 | Not Available | Negative | 3157472 - 3158605 | 42509.3 |
| beta-galactosidase | DWZ36_13435 | Not Available | Negative | 3158611 - 3160425 | 69360.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

