Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidinotransferase | DWZ36_13340 | Not Available | Negative | 3130791 - 3131702 | 34260.9 |
| amidinotransferase | DWZ36_13345 | Not Available | Negative | 3131725 - 3132645 | 35540.8 |
| endonuclease iii | DWZ36_13350 | Not Available | Positive | 3132763 - 3133407 | 24075.6 |
| mbl fold metallo-hydrolase | DWZ36_13355 | Not Available | Negative | 3133402 - 3134178 | 29144.4 |
| udp-n-acetylmuramate dehydrogenase | DWZ36_13360 | Not Available | Negative | 3134187 - 3135200 | 37589.1 |
| duf4348 domain-containing protein | DWZ36_13365 | Not Available | Negative | 3135212 - 3136072 | 33490.7 |
| phenylalanine--trna ligase subunit alpha | DWZ36_13370 | Not Available | Positive | 3136184 - 3137218 | 38993.7 |
| mfs transporter | DWZ36_13375 | Not Available | Positive | 3137346 - 3138542 | 43901.7 |
| hypothetical protein | DWZ36_13380 | Not Available | Negative | 3138539 - 3139681 | 43040.4 |
| 4-amino-4-deoxychorismate lyase | DWZ36_13385 | Not Available | Negative | 3139771 - 3140364 | 22676.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

