Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein l,d-transpeptidase | DWZ36_13290 | Not Available | Negative | 3122245 - 3122979 | 27649.1 |
| mobilization protein | DWZ36_13295 | Not Available | Positive | 3122980 - 3123966 | 38744.4 |
| steroid delta-isomerase | DWZ36_13300 | Not Available | Positive | 3124055 - 3124408 | 13706.5 |
| lincosamide nucleotidyltransferase lnu(an2) | DWZ36_13305 | Not Available | Negative | 3124856 - 3125368 | 19690.2 |
| macrolide efflux mfs transporter mef(en2) | DWZ36_13310 | Not Available | Negative | 3125393 - 3126598 | 44165.4 |
| Trna-ser | Not Available | Not Available | Positive | 3126922 - 3127012 | Not Available |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DWZ36_13320 | Not Available | Negative | 3127100 - 3127555 | 17765.2 |
| 7-cyano-7-deazaguanine synthase quec | DWZ36_13325 | Not Available | Negative | 3127774 - 3128445 | 24891.9 |
| vut family protein | DWZ36_13330 | Not Available | Negative | 3128566 - 3129252 | 25083.7 |
| ornithine--oxo-acid transaminase | DWZ36_13335 | Not Available | Negative | 3129541 - 3130776 | 45621.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

