Phocaeicola vulgatus strain AF31-3

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF31-3 is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized by its single-cell arrangement and is known to inhabit host-associated environments, specifically within Homo sapiens. It possesses a unique structural feature of having two membranes and a single replicon, which is typical for certain bacterial species. As a mesophilic organism, P. vulgatus strain AF31-3 thrives within moderate temperature ranges, making it well-suited for the human microbiome. Its biotic relationship is classified as free-living, indicating that it can exist independently but also interacts with its host. The strain is cataloged under the accession number QRQI00000000.1, providing a reference for further genetic and phenotypic studies. The presence of P. vulgatus in the human gut microbiota suggests its potential role in maintaining gut health, possibly through contributions to digestion or modulation of the immune system. This bacterium's adaptability to anaerobic conditions highlights its importance in the gut environment, where oxygen levels are low, and its structural characteristics may facilitate interactions within the complex microbial community. Understanding P. vulgatus and its ecological niche could provide insights into the dynamics of gut microbiota and their influence on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF31-3

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF31-3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF31-3 AF31-3.Scaf161, whole genome

Gene Summary

Adenine Count

1484022 bp

Thymine Count

1483399 bp

Guanine Count

1069820 bp

Cytosine Count

1074558 bp

Genome Length

5112322 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein l,d-transpeptidaseDWZ36_13290Not AvailableNegative3122245 - 312297927649.1
mobilization proteinDWZ36_13295Not AvailablePositive3122980 - 312396638744.4
steroid delta-isomeraseDWZ36_13300Not AvailablePositive3124055 - 312440813706.5
lincosamide nucleotidyltransferase lnu(an2)DWZ36_13305Not AvailableNegative3124856 - 312536819690.2
macrolide efflux mfs transporter mef(en2)DWZ36_13310Not AvailableNegative3125393 - 312659844165.4
Trna-serNot AvailableNot AvailablePositive3126922 - 3127012Not Available
nadph-dependent 7-cyano-7-deazaguanine reductase quefDWZ36_13320Not AvailableNegative3127100 - 312755517765.2
7-cyano-7-deazaguanine synthase quecDWZ36_13325Not AvailableNegative3127774 - 312844524891.9
vut family proteinDWZ36_13330Not AvailableNegative3128566 - 312925225083.7
ornithine--oxo-acid transaminaseDWZ36_13335Not AvailableNegative3129541 - 313077645621.9

Displaying genes 2561 – 2570 of 4234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.