Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolipoprotein diacylglyceryl transferase | DWZ36_13190 | Not Available | Negative | 3101898 - 3102719 | 31477.1 |
| ketopantoate reductase family protein | DWZ36_13195 | Not Available | Negative | 3102716 - 3103627 | 33089.2 |
| redox-regulated atpase ychf | DWZ36_13200 | Not Available | Negative | 3103752 - 3104855 | 40815.9 |
| duf3836 domain-containing protein | DWZ36_13205 | Not Available | Negative | 3105057 - 3105443 | 15047.1 |
| hypothetical protein | DWZ36_13210 | Not Available | Negative | 3105470 - 3105682 | 8022.03 |
| dna polymerase i | DWZ36_13215 | Not Available | Negative | 3105753 - 3108668 | 109277.0 |
| polyprenyl synthetase family protein | DWZ36_13220 | Not Available | Positive | 3108760 - 3109734 | 36285.5 |
| deoxyribose-phosphate aldolase | DWZ36_13225 | Not Available | Negative | 3109925 - 3110872 | 34798.2 |
| pyrophosphatase | DWZ36_13230 | Not Available | Negative | 3110879 - 3111199 | 12366.8 |
| d-tyrosyl-trna(tyr) deacylase | DWZ36_13235 | Not Available | Negative | 3111199 - 3111651 | 16476.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

