Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00730 family rossman fold protein | DWZ36_13085 | Not Available | Positive | 3080221 - 3080808 | 21517.4 |
| duf4271 domain-containing protein | DWZ36_13090 | Not Available | Positive | 3080805 - 3081617 | 31541.1 |
| uroporphyrinogen-iii synthase | DWZ36_13095 | Not Available | Positive | 3081622 - 3082371 | 28619.6 |
| ribonuclease p protein component | DWZ36_13100 | Not Available | Positive | 3082474 - 3082866 | 15158.8 |
| membrane protein insertion efficiency factor yidd | DWZ36_13105 | Not Available | Positive | 3082863 - 3083084 | 8364.46 |
| hydrolase tatd | DWZ36_13110 | Not Available | Positive | 3083099 - 3083728 | 24010.2 |
| tyrosine--trna ligase | DWZ36_13115 | Not Available | Positive | 3083808 - 3085100 | 48043.5 |
| peptidase s41 | DWZ36_13120 | Not Available | Negative | 3085225 - 3088479 | 121882.0 |
| Trna-gln | Not Available | Not Available | Positive | 3088615 - 3088685 | Not Available |
| flavin reductase family protein | DWZ36_13130 | Not Available | Negative | 3088816 - 3089322 | 19394.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

