Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWZ36_01225 | Not Available | Negative | 298236 - 301637 | 126025.0 |
| duf4974 domain-containing protein | DWZ36_01230 | Not Available | Negative | 301766 - 302740 | 37407.0 |
| rna polymerase sigma-70 factor | DWZ36_01235 | Not Available | Negative | 302869 - 303414 | 21780.4 |
| tlpa family protein disulfide reductase | DWZ36_01240 | Not Available | Negative | 303677 - 305785 | 80229.7 |
| thiol:disulfide interchange protein | DWZ36_01245 | Not Available | Negative | 305808 - 306998 | 44962.0 |
| hypothetical protein | DWZ36_01250 | Not Available | Negative | 307029 - 308372 | 51719.5 |
| m56 family peptidase | DWZ36_01255 | Not Available | Negative | 308383 - 310269 | 70605.0 |
| blai/meci/copy family transcriptional regulator | DWZ36_01260 | Not Available | Negative | 310303 - 310665 | 14012.8 |
| glucuronyl hydrolase | DWZ36_01265 | Not Available | Negative | 310876 - 312099 | 46579.4 |
| glycoside hydrolase | DWZ36_01270 | Not Available | Negative | 312117 - 313766 | 61781.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

