Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock domain-containing protein | DWZ36_12675 | Not Available | Positive | 3012882 - 3013328 | 17045.4 |
| ribonuclease z | DWZ36_12680 | Not Available | Positive | 3013399 - 3014328 | 35255.8 |
| rna polymerase sigma factor | DWZ36_12685 | Not Available | Positive | 3014362 - 3014913 | 21615.8 |
| hypothetical protein | DWZ36_12690 | Not Available | Positive | 3014958 - 3015335 | 14624.4 |
| hypothetical protein | DWZ36_12695 | Not Available | Positive | 3015347 - 3015793 | 17649.5 |
| tonb-dependent receptor | DWZ36_12700 | Not Available | Positive | 3016067 - 3019228 | 117874.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_12705 | Not Available | Positive | 3019252 - 3020982 | 65704.7 |
| nucleoside triphosphate pyrophosphohydrolase | DWZ36_12710 | Not Available | Negative | 3021176 - 3021964 | 30701.6 |
| valine--trna ligase | DWZ36_12715 | Not Available | Positive | 3022072 - 3024699 | 99817.7 |
| hypothetical protein | DWZ36_12720 | Not Available | Negative | 3024880 - 3025320 | 16110.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

