Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4251 domain-containing protein | DWZ36_12625 | Not Available | Positive | 3003972 - 3004529 | 20164.2 |
| duf4136 domain-containing protein | DWZ36_12630 | Not Available | Positive | 3004555 - 3005187 | 24210.4 |
| porin family protein | DWZ36_12635 | Not Available | Positive | 3005200 - 3005838 | 24647.5 |
| histidine kinase | DWZ36_12640 | Not Available | Positive | 3005955 - 3006998 | 40179.1 |
| dna-binding response regulator | DWZ36_12645 | Not Available | Positive | 3006991 - 3007776 | 30228.5 |
| atpase | DWZ36_12650 | Not Available | Positive | 3007932 - 3008771 | 30757.1 |
| n-acetylmuramic acid 6-phosphate etherase | DWZ36_12655 | Not Available | Positive | 3008768 - 3009604 | 30403.0 |
| simpl domain-containing protein | DWZ36_12660 | Not Available | Positive | 3009608 - 3010309 | 26268.6 |
| hypothetical protein | DWZ36_12665 | Not Available | Negative | 3010400 - 3010639 | 9372.52 |
| 30s ribosomal protein s1 | DWZ36_12670 | Not Available | Positive | 3010836 - 3012632 | 67091.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

