Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_12570 | Not Available | Negative | 2992131 - 2992982 | 31795.0 |
| ndp-sugar synthase | DWZ36_12575 | Not Available | Negative | 2993002 - 2993712 | 26297.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DWZ36_12580 | Not Available | Negative | 2993754 - 2994854 | 40677.5 |
| duf4837 family protein | DWZ36_12585 | Not Available | Negative | 2994881 - 2995945 | 40606.1 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DWZ36_12590 | Not Available | Negative | 2995971 - 2997020 | 39554.0 |
| duf4922 domain-containing protein | DWZ36_12595 | Not Available | Positive | 2997107 - 2999578 | 94515.1 |
| spoiid/lytb domain-containing protein | DWZ36_12600 | Not Available | Positive | 2999635 - 3000951 | 49960.9 |
| mfs transporter | DWZ36_12605 | Not Available | Positive | 3001009 - 3002283 | 47707.5 |
| hypothetical protein | DWZ36_12615 | Not Available | Negative | 3002586 - 3002828 | 9153.66 |
| duf4251 domain-containing protein | DWZ36_12620 | Not Available | Positive | 3003184 - 3003738 | 20105.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

