Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secg | DWZ36_12520 | Not Available | Negative | 2982763 - 2983128 | 12571.2 |
| tetratricopeptide repeat protein | DWZ36_12525 | Not Available | Negative | 2983134 - 2983886 | 29436.1 |
| hypothetical protein | DWZ36_12530 | Not Available | Negative | 2983903 - 2984430 | 19738.6 |
| sigma-54-dependent fis family transcriptional regulator | DWZ36_12535 | Not Available | Negative | 2984417 - 2985682 | 46861.1 |
| inositol-3-phosphate synthase | DWZ36_12540 | Not Available | Negative | 2985849 - 2987156 | 48823.8 |
| ribokinase | DWZ36_12545 | Not Available | Positive | 2987292 - 2988188 | 33171.6 |
| sugar mfs transporter | DWZ36_12550 | Not Available | Negative | 2988242 - 2989441 | 44345.3 |
| had family hydrolase | DWZ36_12555 | Not Available | Negative | 2989448 - 2990170 | 27106.8 |
| upf0104 family protein | DWZ36_12560 | Not Available | Negative | 2990175 - 2991176 | 37585.2 |
| cdp-alcohol phosphatidyltransferase family protein | DWZ36_12565 | Not Available | Negative | 2991173 - 2992123 | 37224.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

