Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine synthetase type iii | DWZ36_12410 | Not Available | Negative | 2959691 - 2961880 | 81973.6 |
| ammonium transporter | DWZ36_12415 | Not Available | Negative | 2961943 - 2963301 | 47723.6 |
| p-ii family nitrogen regulator | DWZ36_12420 | Not Available | Negative | 2963377 - 2963733 | 13455.3 |
| hypothetical protein | DWZ36_12425 | Not Available | Negative | 2963849 - 2964574 | 25601.7 |
| ll-diaminopimelate aminotransferase | DWZ36_12430 | Not Available | Negative | 2964691 - 2965920 | 45949.9 |
| diaminopimelate epimerase | DWZ36_12435 | Not Available | Negative | 2965967 - 2966809 | 30341.8 |
| glutamate synthase large subunit | DWZ36_12440 | Not Available | Positive | 2967333 - 2971811 | 164758.0 |
| glutamate synthase subunit beta | DWZ36_12445 | Not Available | Positive | 2971836 - 2973176 | 48702.5 |
| asparagine synthase b | DWZ36_12450 | Not Available | Positive | 2973193 - 2974863 | 62849.7 |
| Trna-thr | Not Available | Not Available | Positive | 2975644 - 2975719 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

