Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | DWZ36_01175 | Not Available | Positive | 285486 - 286871 | 51141.1 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DWZ36_01180 | Not Available | Positive | 286888 - 287655 | 27740.6 |
| hypothetical protein | DWZ36_01185 | Not Available | Positive | 287718 - 288281 | 21611.7 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWZ36_01190 | Not Available | Positive | 288333 - 289235 | 35088.3 |
| alpha-l-fucosidase | DWZ36_01195 | Not Available | Positive | 289244 - 291283 | 76768.4 |
| hypothetical protein | DWZ36_01200 | Not Available | Negative | 291461 - 292234 | 29871.5 |
| right-handed parallel beta-helix repeat-containing protein | DWZ36_01205 | Not Available | Negative | 292490 - 294274 | 66746.6 |
| glycosyl hydrolase family 109 protein 4 | DWZ36_01210 | Not Available | Negative | 294629 - 296179 | 57407.6 |
| hypothetical protein | DWZ36_01215 | Not Available | Positive | 296207 - 296410 | 7976.91 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_01220 | Not Available | Negative | 296407 - 298218 | 69404.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

