Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpaii family restriction endonuclease | DWZ36_12360 | Not Available | Negative | 2944333 - 2945421 | 41445.0 |
| hypothetical protein | DWZ36_12365 | Not Available | Positive | 2945524 - 2945763 | 9468.92 |
| linear amide c-n hydrolase | DWZ36_12370 | Not Available | Positive | 2945922 - 2946980 | 39478.4 |
| hypothetical protein | DWZ36_12375 | Not Available | Positive | 2947215 - 2947673 | 17636.3 |
| hsp20/alpha crystallin family protein | DWZ36_12380 | Not Available | Positive | 2947938 - 2948381 | 16943.0 |
| response regulator | DWZ36_12385 | Not Available | Negative | 2948625 - 2950970 | 89823.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DWZ36_12390 | Not Available | Negative | 2951138 - 2954365 | 119763.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DWZ36_12395 | Not Available | Negative | 2954389 - 2955465 | 39950.5 |
| amidophosphoribosyltransferase | DWZ36_12400 | Not Available | Negative | 2955491 - 2957374 | 71341.8 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DWZ36_12405 | Not Available | Negative | 2957533 - 2959377 | 67787.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

