Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | DWZ36_12310 | Not Available | Positive | 2932905 - 2934110 | 46068.1 |
| response regulator | DWZ36_12315 | Not Available | Negative | 2934114 - 2934470 | 13485.5 |
| hybrid sensor histidine kinase/response regulator | DWZ36_12320 | Not Available | Positive | 2934614 - 2936464 | 71055.3 |
| endonuclease | DWZ36_12325 | Not Available | Positive | 2936468 - 2937529 | 40748.7 |
| hybrid sensor histidine kinase/response regulator | DWZ36_12330 | Not Available | Negative | 2937534 - 2938673 | 42228.6 |
| sdr family oxidoreductase | DWZ36_12335 | Not Available | Negative | 2938683 - 2939621 | 35503.6 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DWZ36_12340 | Not Available | Positive | 2939742 - 2940566 | 29140.4 |
| [acyl-carrier-protein] s-malonyltransferase | DWZ36_12345 | Not Available | Positive | 2940693 - 2941580 | 31271.7 |
| phospholipase | DWZ36_12350 | Not Available | Positive | 2941706 - 2942491 | 29317.4 |
| alpha-amylase | DWZ36_12355 | Not Available | Positive | 2942507 - 2944204 | 64713.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

