Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_12210 | Not Available | Positive | 2917158 - 2917340 | 6793.87 |
| nicotinate-nucleotide adenylyltransferase | DWZ36_12215 | Not Available | Positive | 2917322 - 2917894 | 22162.7 |
| duf3836 domain-containing protein | DWZ36_12220 | Not Available | Negative | 2917977 - 2918447 | 18198.9 |
| metallophosphoesterase | DWZ36_12225 | Not Available | Negative | 2918675 - 2919514 | 31352.6 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | DWZ36_12230 | Not Available | Positive | 2919588 - 2920478 | 32692.7 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DWZ36_12235 | Not Available | Negative | 2920529 - 2921011 | 17475.2 |
| faa hydrolase family protein | DWZ36_12240 | Not Available | Negative | 2921008 - 2921625 | 23340.1 |
| redox-sensing transcriptional repressor rex | DWZ36_12245 | Not Available | Negative | 2921630 - 2922280 | 24251.6 |
| translation initiation factor | DWZ36_12250 | Not Available | Positive | 2922398 - 2922736 | 12663.2 |
| elongation factor ts | DWZ36_12255 | Not Available | Negative | 2922796 - 2923785 | 35504.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

