Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic ribonucleoside-triphosphate reductase activating protein | DWZ36_12160 | Not Available | Positive | 2907886 - 2908344 | 17410.7 |
| rip metalloprotease rsep | DWZ36_12165 | Not Available | Negative | 2908919 - 2910262 | 50887.1 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DWZ36_12170 | Not Available | Negative | 2910319 - 2911467 | 42392.3 |
| m23 family peptidase | DWZ36_12175 | Not Available | Negative | 2911475 - 2912332 | 32093.4 |
| 16s rrna processing protein rimm | DWZ36_12180 | Not Available | Negative | 2912351 - 2912869 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DWZ36_12185 | Not Available | Negative | 2912881 - 2914185 | 47644.1 |
| duf4290 domain-containing protein | DWZ36_12190 | Not Available | Negative | 2914204 - 2914830 | 24903.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DWZ36_12195 | Not Available | Negative | 2914877 - 2915566 | 25285.7 |
| yicc family protein | DWZ36_12200 | Not Available | Positive | 2915662 - 2916537 | 33867.7 |
| guanylate kinase | DWZ36_12205 | Not Available | Positive | 2916584 - 2917153 | 21367.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

