Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4980 domain-containing protein | DWZ36_12110 | Not Available | Negative | 2894017 - 2895900 | 70937.3 |
| tonb-dependent receptor | DWZ36_12115 | Not Available | Negative | 2896049 - 2898367 | 86968.6 |
| dna-binding protein | DWZ36_12120 | Not Available | Positive | 2899003 - 2899614 | 23004.6 |
| prolipoprotein diacylglyceryl transferase | DWZ36_12125 | Not Available | Negative | 2899656 - 2900462 | 31284.6 |
| diaminopimelate dehydrogenase | DWZ36_12130 | Not Available | Negative | 2900569 - 2901468 | 32291.9 |
| holliday junction branch migration protein ruva | DWZ36_12135 | Not Available | Positive | 2901644 - 2902237 | 21141.8 |
| hypothetical protein | DWZ36_12140 | Not Available | Negative | 2902325 - 2903149 | 30836.1 |
| hdig domain-containing protein | DWZ36_12145 | Not Available | Positive | 2903167 - 2904669 | 57599.9 |
| hemolysin iii | DWZ36_12150 | Not Available | Positive | 2904674 - 2905309 | 23650.2 |
| anaerobic ribonucleoside triphosphate reductase | DWZ36_12155 | Not Available | Positive | 2905604 - 2907880 | 86287.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

