Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_12060 | Not Available | Negative | 2882628 - 2883743 | 40051.3 |
| arac family transcriptional regulator | DWZ36_12065 | Not Available | Positive | 2883891 - 2884724 | 32289.8 |
| class ii fructose-1,6-bisphosphate aldolase | DWZ36_12070 | Not Available | Negative | 2884787 - 2885791 | 36460.6 |
| 50s ribosomal protein l31 type b | DWZ36_12075 | Not Available | Positive | 2886123 - 2886377 | 9656.59 |
| duf3256 family protein | DWZ36_12080 | Not Available | Negative | 2886462 - 2887109 | 24349.6 |
| phenylacetate--coa ligase | DWZ36_12085 | Not Available | Positive | 2887223 - 2888521 | 49227.6 |
| amino acid-binding protein | DWZ36_12090 | Not Available | Positive | 2888533 - 2888961 | 15643.0 |
| response regulator | DWZ36_12095 | Not Available | Negative | 2889004 - 2891730 | 103092.0 |
| carbohydrate kinase | DWZ36_12100 | Not Available | Negative | 2891926 - 2892813 | 32432.2 |
| mfs transporter | DWZ36_12105 | Not Available | Negative | 2892841 - 2894001 | 41814.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

