Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | DWZ36_11960 | Not Available | Negative | 2857876 - 2858949 | 41131.5 |
| sugar kinase | DWZ36_11965 | Not Available | Positive | 2859193 - 2860215 | 37004.8 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DWZ36_11970 | Not Available | Positive | 2860325 - 2860999 | 23919.2 |
| peptidase | DWZ36_11975 | Not Available | Positive | 2861253 - 2862071 | 29692.7 |
| arac family transcriptional regulator | DWZ36_11980 | Not Available | Positive | 2862571 - 2863404 | 32094.1 |
| isoleucine--trna ligase | DWZ36_11985 | Not Available | Positive | 2863613 - 2867101 | 132205.0 |
| trar/dksa family transcriptional regulator | DWZ36_11990 | Not Available | Positive | 2867125 - 2867505 | 14347.1 |
| lipoprotein signal peptidase | DWZ36_11995 | Not Available | Positive | 2867615 - 2868253 | 24077.7 |
| duf4296 domain-containing protein | DWZ36_12000 | Not Available | Positive | 2868257 - 2869231 | 37267.1 |
| hypothetical protein | DWZ36_12005 | Not Available | Positive | 2869247 - 2869570 | 12222.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

