Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DWZ36_11910 | Not Available | Negative | 2844567 - 2845250 | 25699.9 |
| lysm peptidoglycan-binding domain-containing protein | DWZ36_11915 | Not Available | Negative | 2845250 - 2847058 | 68546.0 |
| excinuclease abc subunit uvra | DWZ36_11920 | Not Available | Positive | 2847213 - 2850041 | 105897.0 |
| cys-trna(pro) deacylase | DWZ36_11925 | Not Available | Positive | 2850056 - 2850541 | 17802.8 |
| mfs transporter | DWZ36_11930 | Not Available | Positive | 2850648 - 2852309 | 59851.2 |
| lysine exporter lyso family protein | DWZ36_11935 | Not Available | Negative | 2852372 - 2852992 | 22330.3 |
| duf340 domain-containing protein | DWZ36_11940 | Not Available | Negative | 2852989 - 2853267 | 10143.0 |
| duf4373 domain-containing protein | DWZ36_11945 | Not Available | Positive | 2853886 - 2854737 | 32850.2 |
| na+/h+ antiporter nhac family protein | DWZ36_11950 | Not Available | Negative | 2854914 - 2856218 | 46607.5 |
| altronate dehydratase | DWZ36_11955 | Not Available | Negative | 2856364 - 2857854 | 54186.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

