Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-layer protein | DWZ36_01125 | Not Available | Positive | 274741 - 276420 | 64128.5 |
| hypothetical protein | DWZ36_01130 | Not Available | Positive | 276586 - 276801 | 7928.93 |
| cell filamentation protein fic | DWZ36_01135 | Not Available | Negative | 276769 - 277767 | 39541.9 |
| hypothetical protein | DWZ36_01140 | Not Available | Negative | 277770 - 278363 | 22584.9 |
| phosphoribosylformylglycinamidine cyclo-ligase | DWZ36_01145 | Not Available | Positive | 279601 - 280770 | 42663.2 |
| hypothetical protein | DWZ36_01150 | Not Available | Positive | 280751 - 281029 | 10779.0 |
| peptide chain release factor 1 | DWZ36_01155 | Not Available | Positive | 281013 - 282128 | 42032.6 |
| orotidine 5'-phosphate decarboxylase | DWZ36_01160 | Not Available | Positive | 282165 - 282983 | 30601.6 |
| hd domain-containing protein | DWZ36_01165 | Not Available | Positive | 283072 - 284307 | 47210.3 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | DWZ36_01170 | Not Available | Positive | 284440 - 285480 | 36895.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

