Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i pullulanase | DWZ36_11860 | Not Available | Positive | 2832268 - 2834262 | 74697.4 |
| mannonate dehydratase | DWZ36_11865 | Not Available | Positive | 2834320 - 2835498 | 44741.9 |
| patatin | DWZ36_11870 | Not Available | Negative | 2835481 - 2837691 | 81900.4 |
| exonuclease | DWZ36_11875 | Not Available | Positive | 2837899 - 2838387 | 18589.9 |
| yigz family protein | DWZ36_11880 | Not Available | Positive | 2838421 - 2839023 | 22823.7 |
| porin | DWZ36_11885 | Not Available | Positive | 2839214 - 2840227 | 38665.0 |
| excinuclease abc subunit uvrb | DWZ36_11890 | Not Available | Negative | 2840394 - 2842427 | 77715.7 |
| outer membrane protein assembly factor bamd | DWZ36_11895 | Not Available | Positive | 2842593 - 2843429 | 32450.3 |
| rna polymerase rpb6 | DWZ36_11900 | Not Available | Positive | 2843446 - 2843781 | 12965.3 |
| duf4293 family protein | DWZ36_11905 | Not Available | Positive | 2844031 - 2844483 | 16883.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

