Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_11700 | Not Available | Positive | 2800434 - 2800748 | 12133.7 |
| rna pseudouridine synthase | DWZ36_11705 | Not Available | Positive | 2800796 - 2802418 | 62189.9 |
| mate family efflux transporter | DWZ36_11710 | Not Available | Negative | 2802484 - 2803845 | 49516.6 |
| trkh family potassium uptake protein | DWZ36_11715 | Not Available | Negative | 2803971 - 2805479 | 56375.6 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_11720 | Not Available | Positive | 2805974 - 2807173 | 44405.6 |
| multidrug efflux rnd transporter permease subunit | DWZ36_11725 | Not Available | Positive | 2807240 - 2810341 | 113097.0 |
| tolc family protein | DWZ36_11730 | Not Available | Positive | 2810363 - 2811736 | 51778.1 |
| hypothetical protein | DWZ36_11735 | Not Available | Negative | 2811775 - 2812986 | 45812.4 |
| atp-binding protein | DWZ36_11740 | Not Available | Positive | 2813089 - 2814267 | 46146.3 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DWZ36_11745 | Not Available | Positive | 2814310 - 2817855 | 129333.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

