Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coce/nond family hydrolase | DWZ36_11480 | Not Available | Positive | 2756206 - 2758113 | 73940.9 |
| duf4954 family protein | DWZ36_11485 | Not Available | Negative | 2758261 - 2760246 | 74478.4 |
| gtpase hflx | DWZ36_11490 | Not Available | Negative | 2760260 - 2761513 | 47629.5 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_11495 | Not Available | Negative | 2761605 - 2763191 | 58810.6 |
| tonb-dependent receptor | DWZ36_11500 | Not Available | Negative | 2763215 - 2766187 | 110189.0 |
| rna methyltransferase | DWZ36_11510 | Not Available | Negative | 2767848 - 2768654 | 29032.5 |
| zn-dependent alcohol dehydrogenase | DWZ36_11515 | Not Available | Negative | 2768690 - 2769736 | 38491.5 |
| hsp20/alpha crystallin family protein | DWZ36_11520 | Not Available | Positive | 2770065 - 2770502 | 16949.0 |
| gtra family protein | DWZ36_11525 | Not Available | Positive | 2770897 - 2771286 | 14958.9 |
| dna-binding protein | DWZ36_11530 | Not Available | Positive | 2771639 - 2772541 | 35137.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

