Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DWZ36_11430 | Not Available | Negative | 2740246 - 2741826 | 61241.0 |
| ribosome-recycling factor | DWZ36_11435 | Not Available | Positive | 2742065 - 2742625 | 20738.2 |
| ribosome small subunit-dependent gtpase a | DWZ36_11440 | Not Available | Positive | 2742746 - 2743678 | 35098.8 |
| m20/m25/m40 family metallo-hydrolase | DWZ36_11445 | Not Available | Positive | 2743692 - 2744711 | 38281.6 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_11450 | Not Available | Positive | 2744798 - 2745874 | 39713.1 |
| acrb/acrd/acrf family protein | DWZ36_11455 | Not Available | Positive | 2745894 - 2748929 | 112044.0 |
| tolc family protein | DWZ36_11460 | Not Available | Positive | 2748926 - 2750245 | 50645.8 |
| amino acid permease | DWZ36_11465 | Not Available | Positive | 2750334 - 2751992 | 59776.4 |
| alpha-n-acetylglucosaminidase | DWZ36_11470 | Not Available | Negative | 2752165 - 2754321 | 82790.5 |
| fumarate hydratase | DWZ36_11475 | Not Available | Negative | 2754424 - 2756067 | 60487.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

