Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yran family protein | DWZ36_11380 | Not Available | Positive | 2727202 - 2727567 | 14153.8 |
| mmcq/yjbr family dna-binding protein | DWZ36_11385 | Not Available | Positive | 2727585 - 2727941 | 13937.7 |
| biotin--[acetyl-coa-carboxylase] ligase | DWZ36_11390 | Not Available | Positive | 2727925 - 2728692 | 29241.9 |
| peptidase s41 | DWZ36_11395 | Not Available | Negative | 2728689 - 2730128 | 54134.5 |
| mate family efflux transporter | DWZ36_11400 | Not Available | Positive | 2730287 - 2731612 | 49013.7 |
| ump kinase | DWZ36_11405 | Not Available | Positive | 2731651 - 2732361 | 25575.2 |
| glycoside hydrolase family 88 protein | DWZ36_11410 | Not Available | Positive | 2732619 - 2733857 | 47168.2 |
| hypothetical protein | DWZ36_11415 | Not Available | Positive | 2733912 - 2736020 | 79979.2 |
| duf4450 domain-containing protein | DWZ36_11420 | Not Available | Positive | 2736045 - 2739302 | 121482.0 |
| histidine phosphatase family protein | DWZ36_11425 | Not Available | Negative | 2739325 - 2739843 | 19422.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

