Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_11280 | Not Available | Negative | 2706736 - 2708757 | 76043.9 |
| alpha/beta hydrolase | DWZ36_11285 | Not Available | Positive | 2709312 - 2710283 | 34820.5 |
| dna polymerase iv | DWZ36_11290 | Not Available | Positive | 2710720 - 2711814 | 41305.8 |
| adp-ribosylglycohydrolase | DWZ36_11295 | Not Available | Negative | 2711795 - 2712583 | 29815.7 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | DWZ36_11300 | Not Available | Positive | 2712747 - 2713508 | 29056.7 |
| class i fructose-bisphosphate aldolase | DWZ36_11305 | Not Available | Positive | 2713660 - 2714712 | 38066.5 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DWZ36_11310 | Not Available | Positive | 2714874 - 2716100 | 45942.6 |
| phospholipase | DWZ36_11315 | Not Available | Positive | 2716105 - 2716524 | 15918.1 |
| metal abc transporter permease | DWZ36_11320 | Not Available | Positive | 2716577 - 2717428 | 31184.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DWZ36_11325 | Not Available | Positive | 2717412 - 2717840 | 16199.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

