Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_11170 | Not Available | Positive | 2676488 - 2677747 | 45794.5 |
| acrb/acrd/acrf family protein | DWZ36_11175 | Not Available | Positive | 2677759 - 2680842 | 112516.0 |
| tolc family protein | DWZ36_11180 | Not Available | Positive | 2680853 - 2682022 | 43859.6 |
| nitroreductase family protein | DWZ36_11185 | Not Available | Positive | 2682134 - 2682862 | 27942.3 |
| gfo/idh/moca family oxidoreductase | DWZ36_11195 | Not Available | Negative | 2683230 - 2684792 | 58071.8 |
| homoserine o-succinyltransferase | DWZ36_11200 | Not Available | Positive | 2685175 - 2686092 | 35746.9 |
| collagenase-like protease | DWZ36_11205 | Not Available | Positive | 2686089 - 2687918 | 69827.9 |
| zinc ribbon domain-containing protein | DWZ36_11210 | Not Available | Positive | 2687905 - 2688867 | 36673.0 |
| tonb-dependent receptor | DWZ36_11215 | Not Available | Negative | 2689107 - 2691533 | 92160.0 |
| luxr family transcriptional regulator | DWZ36_11220 | Not Available | Negative | 2691703 - 2692323 | 23357.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

