Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_11115 | Not Available | Positive | 2657863 - 2659371 | 56887.3 |
| sgnh/gdsl hydrolase family protein | DWZ36_11120 | Not Available | Positive | 2659972 - 2660823 | 32455.8 |
| rna polymerase sigma-70 factor | DWZ36_11130 | Not Available | Positive | 2662818 - 2663408 | 23285.1 |
| fecr family protein | DWZ36_11135 | Not Available | Positive | 2663479 - 2664492 | 39115.7 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_11140 | Not Available | Positive | 2664742 - 2668062 | 122257.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_11145 | Not Available | Positive | 2668076 - 2669764 | 64144.1 |
| hypothetical protein | DWZ36_11150 | Not Available | Positive | 2669782 - 2671458 | 63045.8 |
| abc transporter atp-binding protein | DWZ36_11155 | Not Available | Positive | 2671855 - 2673798 | 73630.3 |
| m13 family peptidase | DWZ36_11160 | Not Available | Positive | 2673848 - 2675860 | 74934.0 |
| hypothetical protein | DWZ36_11165 | Not Available | Positive | 2675890 - 2676393 | 19121.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

