Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glycosidase | DWZ36_11055 | Not Available | Negative | 2631455 - 2633053 | 59513.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_11060 | Not Available | Negative | 2633170 - 2634828 | 63043.9 |
| tonb-dependent receptor | DWZ36_11065 | Not Available | Negative | 2634846 - 2637884 | 112401.0 |
| hypothetical protein | DWZ36_11070 | Not Available | Negative | 2637907 - 2639406 | 56154.5 |
| hybrid sensor histidine kinase/response regulator | DWZ36_11075 | Not Available | Positive | 2639620 - 2643660 | 153033.0 |
| histidine-type phosphatase | DWZ36_11080 | Not Available | Negative | 2643908 - 2645647 | 66792.9 |
| glycoside hydrolase family 92 protein | DWZ36_11085 | Not Available | Negative | 2645654 - 2647936 | 86220.0 |
| glycoside hydrolase family 28 protein | DWZ36_11090 | Not Available | Negative | 2647939 - 2649351 | 52172.1 |
| glycoside hydrolase family 92 protein | DWZ36_11095 | Not Available | Negative | 2649377 - 2651710 | 88800.2 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_11110 | Not Available | Positive | 2654620 - 2657841 | 118912.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

