Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_10990 | Not Available | Positive | 2615655 - 2617328 | 63476.4 |
| tonb-dependent receptor | DWZ36_11010 | Not Available | Positive | 2620010 - 2622310 | 86528.3 |
| duf4374 domain-containing protein | DWZ36_11015 | Not Available | Positive | 2622368 - 2623768 | 51093.6 |
| pepsy domain-containing protein | DWZ36_11020 | Not Available | Positive | 2623785 - 2624981 | 45260.4 |
| magnesium transporter cora family protein | DWZ36_11025 | Not Available | Negative | 2625075 - 2625998 | 35626.5 |
| hypothetical protein | DWZ36_11030 | Not Available | Positive | 2626049 - 2626237 | 7149.88 |
| peroxiredoxin | DWZ36_11035 | Not Available | Positive | 2626505 - 2627071 | 21111.1 |
| alkyl hydroperoxide reductase subunit f | DWZ36_11040 | Not Available | Positive | 2627084 - 2628634 | 55984.4 |
| laci family transcriptional regulator | DWZ36_11045 | Not Available | Positive | 2628774 - 2629796 | 38256.6 |
| xylanase | DWZ36_11050 | Not Available | Negative | 2629877 - 2631442 | 59563.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

