Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_10775 | Not Available | Positive | 2561219 - 2562469 | 47799.6 |
| abc transporter atp-binding protein | DWZ36_10780 | Not Available | Positive | 2562483 - 2563193 | 26407.0 |
| abc transporter permease | DWZ36_10785 | Not Available | Positive | 2563193 - 2565613 | 91834.4 |
| transcriptional regulator | DWZ36_10790 | Not Available | Positive | 2566599 - 2567432 | 31998.5 |
| phosphoenolpyruvate mutase | DWZ36_10800 | Not Available | Positive | 2568369 - 2569691 | 48780.8 |
| phosphonopyruvate decarboxylase | DWZ36_10805 | Not Available | Positive | 2569688 - 2570827 | 41483.9 |
| iron-containing alcohol dehydrogenase | DWZ36_10810 | Not Available | Positive | 2570830 - 2571942 | 41019.8 |
| hypothetical protein | DWZ36_10815 | Not Available | Positive | 2571979 - 2572698 | 27391.2 |
| lipopolysaccharide biosynthesis protein | DWZ36_10820 | Not Available | Positive | 2572726 - 2574147 | 53023.2 |
| o-antigen ligase domain-containing protein | DWZ36_10825 | Not Available | Positive | 2574459 - 2575631 | 44099.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

