Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m48 family peptidase | DWZ36_10255 | Not Available | Negative | 2457814 - 2458518 | 27308.5 |
| duf2807 domain-containing protein | DWZ36_10260 | Not Available | Positive | 2458625 - 2459356 | 25978.6 |
| hypothetical protein | DWZ36_10265 | Not Available | Negative | 2459554 - 2460033 | 18338.9 |
| rna polymerase sigma factor | DWZ36_10270 | Not Available | Negative | 2460023 - 2460532 | 20158.2 |
| acetylglutamate kinase | DWZ36_10275 | Not Available | Negative | 2460596 - 2461369 | 27207.2 |
| biosynthetic arginine decarboxylase | DWZ36_10280 | Not Available | Negative | 2461374 - 2463266 | 71492.0 |
| shikimate kinase | DWZ36_10285 | Not Available | Negative | 2463308 - 2463835 | 20453.7 |
| type i dna topoisomerase | DWZ36_10290 | Not Available | Negative | 2463832 - 2466270 | 91433.3 |
| tonb-dependent receptor | DWZ36_10295 | Not Available | Negative | 2466392 - 2468089 | 64379.8 |
| tetratricopeptide repeat protein | DWZ36_10300 | Not Available | Negative | 2468113 - 2471016 | 111179.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

