Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose:h+ symporter permease | DWZ36_10105 | Not Available | Positive | 2421134 - 2422447 | 48425.4 |
| ribonuclease hii | DWZ36_10110 | Not Available | Negative | 2422590 - 2423195 | 22930.4 |
| tetratricopeptide repeat protein | DWZ36_10115 | Not Available | Positive | 2423297 - 2424922 | 63109.8 |
| tonb-dependent receptor | DWZ36_10120 | Not Available | Positive | 2425146 - 2428274 | 116534.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_10125 | Not Available | Positive | 2428295 - 2429812 | 57946.4 |
| duf340 domain-containing protein | DWZ36_10130 | Not Available | Positive | 2429927 - 2430208 | 10217.2 |
| lysine exporter lyso family protein | DWZ36_10135 | Not Available | Positive | 2430205 - 2430807 | 21649.9 |
| duf4981 domain-containing protein | DWZ36_10140 | Not Available | Positive | 2430821 - 2433997 | 121444.0 |
| glycoside hydrolase | DWZ36_10145 | Not Available | Positive | 2434015 - 2435949 | 73006.9 |
| hypothetical protein | DWZ36_10150 | Not Available | Negative | 2436044 - 2436298 | 10012.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

