Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| comec family competence protein | DWZ36_00920 | Not Available | Negative | 217155 - 219074 | 72652.5 |
| ribulose-phosphate 3-epimerase | DWZ36_00925 | Not Available | Negative | 219121 - 219774 | 23913.3 |
| porin family protein | DWZ36_00930 | Not Available | Negative | 219850 - 221145 | 48084.6 |
| sigma-70 family rna polymerase sigma factor | DWZ36_00935 | Not Available | Negative | 221148 - 221690 | 20885.1 |
| hypothetical protein | DWZ36_00940 | Not Available | Positive | 221848 - 222630 | 28969.6 |
| methionyl-trna formyltransferase | DWZ36_00945 | Not Available | Negative | 222703 - 223677 | 36638.5 |
| chloride channel protein | DWZ36_00950 | Not Available | Negative | 223691 - 225484 | 66651.6 |
| threonylcarbamoyl-amp synthase | DWZ36_00955 | Not Available | Negative | 225503 - 226078 | 21153.3 |
| n-acetylglucosamine-6-phosphate deacetylase | DWZ36_00960 | Not Available | Negative | 226245 - 227408 | 42218.9 |
| acrb/acrd/acrf family protein | DWZ36_00965 | Not Available | Negative | 227499 - 230675 | 121074.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

