Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | DWZ36_09680 | Not Available | Negative | 2323091 - 2324407 | 49038.9 |
| carbohydrate kinase | DWZ36_09685 | Not Available | Negative | 2324499 - 2325992 | 53489.7 |
| nudix hydrolase | DWZ36_09690 | Not Available | Negative | 2326165 - 2326899 | 28614.6 |
| response regulator | DWZ36_09695 | Not Available | Positive | 2327255 - 2327620 | 14101.4 |
| sugar transferase | DWZ36_09700 | Not Available | Positive | 2327627 - 2328802 | 44978.8 |
| hypothetical protein | DWZ36_09705 | Not Available | Positive | 2328839 - 2329702 | 32645.0 |
| hypothetical protein | DWZ36_09710 | Not Available | Positive | 2329708 - 2331855 | 82540.7 |
| o-antigen ligase domain-containing protein | DWZ36_09715 | Not Available | Positive | 2331859 - 2333319 | 54858.9 |
| glycosyltransferase family 2 protein | DWZ36_09720 | Not Available | Positive | 2333300 - 2334205 | 34487.7 |
| glycosyltransferase | DWZ36_09725 | Not Available | Positive | 2334202 - 2335326 | 43064.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

