Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | DWZ36_09630 | Not Available | Positive | 2311235 - 2311861 | 23001.3 |
| thiol peroxidase | DWZ36_09635 | Not Available | Positive | 2311930 - 2312433 | 17976.7 |
| gdp-l-fucose synthase | DWZ36_09640 | Not Available | Negative | 2312628 - 2313704 | 40525.7 |
| gdp-mannose 4,6-dehydratase | DWZ36_09645 | Not Available | Negative | 2313704 - 2314786 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DWZ36_09650 | Not Available | Negative | 2314962 - 2316026 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DWZ36_09655 | Not Available | Positive | 2316140 - 2317543 | 54181.0 |
| glucose-1-phosphate thymidylyltransferase | DWZ36_09660 | Not Available | Positive | 2317579 - 2318466 | 32723.6 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWZ36_09665 | Not Available | Positive | 2318466 - 2319035 | 21738.7 |
| chain-length determining protein | DWZ36_09670 | Not Available | Negative | 2319212 - 2320351 | 41468.8 |
| capsule biosynthesis protein | DWZ36_09675 | Not Available | Negative | 2320359 - 2322851 | 92256.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

