Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imp dehydrogenase | DWZ36_09370 | Not Available | Negative | 2257653 - 2259128 | 52760.1 |
| hypothetical protein | DWZ36_09380 | Not Available | Positive | 2259380 - 2259814 | 17229.6 |
| helicase | DWZ36_09385 | Not Available | Negative | 2259938 - 2262034 | 80620.3 |
| dna helicase recq | DWZ36_09390 | Not Available | Negative | 2262712 - 2264892 | 81679.6 |
| atp-dependent clp protease atp-binding subunit clpx | DWZ36_09395 | Not Available | Negative | 2265050 - 2266300 | 46679.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DWZ36_09400 | Not Available | Negative | 2266424 - 2267095 | 24864.8 |
| trigger factor | DWZ36_09405 | Not Available | Negative | 2267276 - 2268631 | 51542.8 |
| rna-binding protein | DWZ36_09410 | Not Available | Positive | 2269013 - 2269258 | 9049.81 |
| lps export abc transporter atp-binding protein | DWZ36_09415 | Not Available | Negative | 2269335 - 2270156 | 31018.3 |
| abc transporter permease | DWZ36_09420 | Not Available | Positive | 2270285 - 2271028 | 27369.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

