Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan--trna ligase | DWZ36_09270 | Not Available | Negative | 2231037 - 2232131 | 41376.8 |
| hypothetical protein | DWZ36_09275 | Not Available | Positive | 2232235 - 2233026 | 29912.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DWZ36_09280 | Not Available | Positive | 2233281 - 2236502 | 119492.0 |
| tonb-dependent receptor | DWZ36_09285 | Not Available | Negative | 2236568 - 2239372 | 106631.0 |
| tlpa family protein disulfide reductase | DWZ36_09290 | Not Available | Negative | 2239393 - 2239893 | 19123.4 |
| peroxide stress protein yaaa | DWZ36_09295 | Not Available | Positive | 2239981 - 2240748 | 29392.5 |
| hypothetical protein | DWZ36_09300 | Not Available | Positive | 2240855 - 2242054 | 43736.0 |
| sulfotransferase | DWZ36_09305 | Not Available | Negative | 2242132 - 2243238 | 43290.1 |
| sulfate adenylyltransferase subunit cysn | DWZ36_09310 | Not Available | Negative | 2243266 - 2244723 | 54506.5 |
| sulfate adenylyltransferase subunit cysd | DWZ36_09315 | Not Available | Negative | 2244760 - 2245671 | 35794.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

