Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | DWZ36_00870 | Not Available | Positive | 203735 - 205261 | 55312.3 |
| duf1893 domain-containing protein | DWZ36_00875 | Not Available | Positive | 205279 - 205698 | 15717.2 |
| cupin domain-containing protein | DWZ36_00880 | Not Available | Positive | 205876 - 206430 | 20522.8 |
| acetyl-coa synthetase | DWZ36_00885 | Not Available | Positive | 206514 - 208166 | 62298.4 |
| hypothetical protein | DWZ36_00890 | Not Available | Positive | 208211 - 208675 | 17243.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_00895 | Not Available | Negative | 208989 - 210959 | 74025.4 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_00900 | Not Available | Negative | 210981 - 213845 | 105064.0 |
| phosphoglucosamine mutase | DWZ36_00905 | Not Available | Negative | 213962 - 215350 | 50475.7 |
| duf4827 domain-containing protein | DWZ36_00910 | Not Available | Negative | 215347 - 215982 | 24185.6 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DWZ36_00915 | Not Available | Negative | 216065 - 217105 | 39348.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

