Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_09115 | Not Available | Negative | 2179553 - 2181592 | 76712.5 |
| tonb-dependent receptor | DWZ36_09120 | Not Available | Negative | 2181605 - 2184940 | 122693.0 |
| s9 family peptidase | DWZ36_09125 | Not Available | Negative | 2185470 - 2187713 | 85702.8 |
| glycoside hydrolase family 127 protein | DWZ36_09130 | Not Available | Negative | 2187725 - 2190130 | 89602.9 |
| glycoside hydrolase | DWZ36_09135 | Not Available | Negative | 2190201 - 2192603 | 90061.1 |
| glycoside hydrolase family 97 protein | DWZ36_09140 | Not Available | Negative | 2192640 - 2195363 | 103330.0 |
| duf4859 domain-containing protein | DWZ36_09145 | Not Available | Negative | 2195562 - 2197826 | 84454.6 |
| duf4859 domain-containing protein | DWZ36_09150 | Not Available | Negative | 2198082 - 2199092 | 36202.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_09155 | Not Available | Negative | 2199124 - 2200803 | 63688.1 |
| rna polymerase sigma-70 factor | DWZ36_09165 | Not Available | Positive | 2204072 - 2204662 | 23832.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

